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G

get(int) - Method in class chemCast.similarity.data.ChemCastDescriptorsList
 
get(int) - Method in class chemCast.similarity.data.Endpoints
 
get(int) - Method in class chemCast.similarity.data.SimilarityDefs
 
get(int) - Method in class chemCast.similarity.data.SimilarityModels
 
get(int) - Method in class chemCast.similarity.data.Subsets
 
getAtomContainer(int) - Method in class chemCast.data.FilteredMoleculesFile
 
getAtomContainer(int) - Method in class chemCast.data.MoleculesFile
 
getAtomContainer() - Method in class chemCast.data.SelectedItem
 
getAtomContainerCount() - Method in class chemCast.data.FilteredMoleculesFile
 
getAtomContainerCount() - Method in class chemCast.data.MoleculesFile
 
getAttributes() - Method in class chemCast.weka.Subsets2Instances
 
getAttributeSelection() - Method in class chemCast.similarity.data.NearestNeighborsSimilaritySubsets
 
getAvailableProperties() - Method in class chemCast.data.FilteredMoleculesFile
 
getAvailableProperties() - Method in class chemCast.data.MoleculesFile
 
getBackId() - Method in class chemCast.ui.wizard.ChemCastWizardPanelDescriptor
 
getBackPanelDescriptor() - Method in class chemCast.ui.wizard.ChemCastWizardPanelDescriptor
 
getBatchStatistics() - Method in class chemCast.application.ChemCASTModule
 
getBatshStatistics() - Method in class chemCast.ui.actions.FileBatchProcessing
 
getCalculator() - Method in class chemCast.similarity.data.ChemCastDescriptor
 
getCaption() - Method in class chemCast.ui.ListPanel
 
getCellEditorValue() - Method in class chemCast.ui.PropertiesCellRenderer
 
getClassificationProperty() - Method in class chemCast.similarity.data.NearestNeighborsSimilaritySubsets
 
getClassificationProperty() - Method in class chemCast.similarity.data.ToxTreeSimilarity
 
getClassificationProperty() - Method in class chemCast.weka.AbstractWekaModel
 
getClassifier() - Method in class chemCast.weka.WekaSimilarityModel
 
getClassName() - Method in class chemCast.similarity.data.SimilarityDef
 
getClassProperty() - Method in class chemCast.weka.AbstractWekaModel
 
getClassProperty() - Method in class chemCast.weka.Subsets2Instances
 
getClusterer() - Method in class chemCast.weka.WekaClustering
 
getColor() - Method in class chemCast.similarity.data.Dataset
 
getColor(int) - Method in class chemCast.ui.MoleculesXYZDataset
 
getColorProperty() - Method in class chemCast.ui.MoleculesXYZDataset
 
getColumn() - Method in class chemCast.ui.SimilarityMatrixPanel
 
getColumnClass(int) - Method in class chemCast.ui.ChemCastListTableModel
 
getColumnCount() - Method in class chemCast.ui.ChemCastListTableModel
 
getColumnCount() - Method in class chemCast.ui.PropertiesTableModel
 
getColumns_data() - Method in class chemCast.similarity.data.SubsetSimilarityMatrix
 
getColumnSelected(JTable, int) - Method in class chemCast.ui.SelectionListener
 
getCondition() - Method in class chemCast.data.PairwiseSimilarityFilter
 
getCondition() - Method in class chemCast.ui.MatrixToolbar
 
getConvertor() - Method in class chemCast.weka.WekaSimilarityModel
 
getData() - Method in class chemCast.similarity.data.Dataset
 
getData() - Method in class chemCast.similarity.data.DatasetDef
 
getData() - Method in class chemCast.similarity.data.Subset
 
getDataset(int) - Method in class chemCast.application.ChemCASTModule
 
getDataset() - Method in class chemCast.data.SelectedItem
 
getDataset() - Method in class chemCast.ui.actions.ConfiguredTrainingSetOpenAction
 
getDataset() - Method in class chemCast.ui.actions.FileNewTrainingAction
 
getDataset() - Method in class chemCast.ui.actions.FileOpenAction
 
getDataset() - Method in class chemCast.ui.actions.TrainingSetOpenAction
 
getDatasetResultField() - Method in class chemCast.similarity.data.DatasetDef
 
getDatasets() - Method in class chemCast.application.ChemCASTModule
 
getDatasets() - Method in class chemCast.similarity.data.AtomEnvironmentSimilarity
 
getDatasets() - Method in class chemCast.similarity.data.FingerprintSimilaritySubsets
 
getDatasets() - Method in class chemCast.similarity.data.MCSSSimilarity
 
getDatasets() - Method in class chemCast.similarity.data.NearestNeighborsSimilaritySubsets
 
getDatasets() - Method in class chemCast.similarity.data.ToxTreeSimilarity
 
getDatasets() - Method in class chemCast.weka.AbstractWekaModel
 
getDatasets() - Method in interface chemCast.weka.ISubsetsModel
 
getDatasetSource() - Method in class chemCast.similarity.data.DatasetDef
 
getDatasetTemplate() - Method in class chemCast.similarity.data.DatasetDef
 
getDatasetValue() - Method in class chemCast.similarity.data.DatasetDef
 
getDefaultDir() - Method in class chemCast.application.ChemCASTModule
 
getDescriptorClass() - Method in class chemCast.similarity.data.ChemCastDescriptor
 
getDescriptors() - Method in class chemCast.similarity.data.SimilarityDef
 
getDescriptors() - Method in class chemCast.weka.AbstractWekaModel
 
getDescriptors() - Method in class chemCast.weka.Subsets2Instances
 
getDescriptors() - Method in class chemCast.weka.WekaClustering
 
getDescriptorsList() - Method in class chemCast.similarity.data.DatasetDef
 
getDistance(Instance, Instance) - Method in class chemCast.weka.CosineSimilarity
 
getDistance(Instance, Instance) - Method in class chemCast.weka.DiceSimilarity
 
getDistance(Instance, Instance) - Method in class chemCast.weka.EuclideanSimilarity
 
getDistance(Instance, Instance) - Method in class chemCast.weka.JaccardSimilarity
 
getDistance(Instance) - Method in class chemCast.weka.WekaSimilarityModel
 
getEditor() - Method in class chemCast.data.AbstractFilter
 
getEditor() - Method in interface chemCast.data.IObjectFilter
 
getEditor() - Method in class chemCast.data.ObjectPropertyFilter
 
getEditor() - Method in class chemCast.data.RangePropertyFilter
 
getEditor() - Method in class chemCast.data.VerhaarSchemeFilter
 
getEditor() - Method in class chemCast.similarity.data.ChemCastDescriptorsList
 
getEditor() - Method in class chemCast.similarity.data.ChemCastObject
 
getEditor() - Method in class chemCast.similarity.data.Dataset
 
getEditor() - Method in class chemCast.similarity.data.DatasetDef
 
getEditor() - Method in class chemCast.similarity.data.SimilarityDef
 
getEditor() - Method in class chemCast.similarity.data.SimilarityModel
 
getEditor() - Method in class chemCast.similarity.data.Subset
 
getEditor() - Method in class chemCast.weka.WekaClustering
 
getEditor() - Method in class chemCast.weka.WekaSimilarityModel
 
getEndpoint() - Method in class chemCast.application.ChemCASTModule
 
getEndpoint() - Method in class chemCast.ui.wizard.EndpointsWizard
 
getFields() - Method in class chemCast.similarity.data.Subsets
 
getFilter() - Method in class chemCast.data.FilteredMoleculesFile
 
getFilterClass() - Method in class chemCast.similarity.data.Subset
 
getFilterClass() - Method in class chemCast.similarity.data.Subsets
 
getFilters() - Method in class chemCast.data.MultipleFilters
 
getFpIndex() - Method in class chemCast.weka.FingerprintAttribute
 
getGroups() - Method in class chemCast.similarity.data.SimilarityDef
 
getHistogramMode() - Method in class chemCast.ui.SimilarityResultViewer
 
getId() - Method in class chemCast.ui.wizard.ChemCastWizardPanelDescriptor
 
getIndex() - Method in class chemCast.data.SelectedItem
 
getInstanceProcessor() - Method in class chemCast.weka.Subsets2Instances
 
getItemCount(int) - Method in class chemCast.ui.MoleculesXYZDataset
 
getJComponent() - Method in class chemCast.similarity.data.DefaultChemCastEditor
 
getJComponent() - Method in class chemCast.similarity.data.SimilarityDefEditor
 
getJComponent() - Method in class chemCast.ui.AbstractFilterEditor
 
getKeyValuesUpdater() - Method in class chemCast.ui.ObjectPropertyFilterEditor
 
getLabel(int, int) - Method in class chemCast.ui.MoleculesXYZDataset
e.g.
getLabelProperty() - Method in class chemCast.ui.MoleculesXYZDataset
 
getList() - Method in class chemCast.similarity.data.ChemCastDescriptorsList
 
getList() - Method in class chemCast.similarity.data.Endpoints
 
getList() - Method in interface chemCast.similarity.data.IChemCastList
 
getList() - Method in class chemCast.similarity.data.SimilarityDefs
 
getList() - Method in class chemCast.similarity.data.Subsets
 
getList() - Method in class chemCast.ui.ChemCastListTableModel
 
getLists() - Method in class chemCast.ui.ListsPanel
 
getMaxValue() - Method in class chemCast.data.RangePropertyFilter
 
getMinValue() - Method in class chemCast.data.RangePropertyFilter
 
getName() - Method in class chemCast.similarity.data.Endpoint
 
getName() - Method in class chemCast.similarity.data.SimilarityDef
 
getName() - Method in class chemCast.similarity.data.Subset
 
getName() - Method in class chemCast.similarity.data.Subsets
 
getNativeComparison(Instance, Instance) - Method in class chemCast.weka.CosineSimilarity
 
getNativeComparison(Instance, Instance) - Method in class chemCast.weka.DiceSimilarity
 
getNativeComparison(Instance, Instance) - Method in class chemCast.weka.EuclideanSimilarity
 
getNativeComparison(Instance, Instance) - Method in class chemCast.weka.JaccardSimilarity
 
getNewValue() - Method in class chemCast.events.DatasetChangeEvent
 
getNextId() - Method in class chemCast.ui.wizard.ChemCastWizardPanelDescriptor
 
getNextPanelDescriptor() - Method in class chemCast.ui.wizard.ChemCastWizardPanelDescriptor
 
getNNFromCols() - Method in class chemCast.ui.MatrixToolbar
 
getNNFromRows() - Method in class chemCast.ui.MatrixToolbar
 
getOldValue() - Method in class chemCast.events.DatasetChangeEvent
 
getOptions() - Method in class chemCast.ui.RadioBoxPanel
 
getParameter(Object) - Method in class chemCast.similarity.data.AtomEnvironmentSimilarity
 
getParameter(Object) - Method in class chemCast.similarity.data.MCSSSimilarity
 
getParameter(Object) - Method in class chemCast.similarity.data.NearestNeighborsSimilaritySubsets
 
getParameter(Object) - Method in class chemCast.similarity.data.NNAtomEnvironmentSimilaritySubsets
 
getParameter(Object) - Method in class chemCast.similarity.data.ToxTreeSimilarity
 
getParameter(Object) - Method in class chemCast.weka.AbstractWekaModel
 
getParameter(Object) - Method in class chemCast.weka.WekaSimilarityModel
 
getParameterNames() - Method in class chemCast.similarity.data.ChemCastDescriptor
 
getParameters() - Method in class chemCast.similarity.data.ChemCastDescriptor
 
getParameters() - Method in class chemCast.similarity.data.SimilarityDef
 
getParameters() - Method in class chemCast.similarity.data.Subset
 
getParameterType(String) - Method in class chemCast.similarity.data.ChemCastDescriptor
 
getParentDataset() - Method in class chemCast.similarity.data.Subset
 
getParentDataset() - Method in class chemCast.similarity.data.Subsets
 
getPredictedProperty() - Method in class chemCast.similarity.data.NearestNeighborsSimilaritySubsets
 
getPredictedProperty() - Method in class chemCast.weka.AbstractWekaModel
 
getProcessor() - Method in class chemCast.data.ProcessorFilter
 
getProcessor() - Method in class chemCast.similarity.data.SimilarityModel
 
getProcessor() - Method in class chemCast.ui.actions.FileBatchProcessing
 
getProcessors() - Method in class chemCast.similarity.data.SimilaritySubsets
 
getProperties() - Method in class chemCast.application.ChemCASTModule
 
getProperties() - Method in class chemCast.data.AbstractFilter
 
getProperties(int) - Method in class chemCast.data.FilteredMoleculesFile
 
getProperties() - Method in interface chemCast.data.IObjectFilter
 
getProperties(int) - Method in class chemCast.data.MoleculesFile
 
getProperties() - Method in class chemCast.similarity.data.AtomEnvironmentSimilarity
 
getProperties() - Method in class chemCast.similarity.data.DatasetDef
 
getProperties() - Method in class chemCast.similarity.data.NearestNeighborsSimilaritySubsets
 
getProperties() - Method in class chemCast.similarity.data.ToxTreeSimilarity
 
getProperties() - Method in class chemCast.weka.WekaClustering
 
getProperties() - Method in class chemCast.weka.WekaSimilarityModel
 
getProperty(String) - Method in class chemCast.data.AbstractFilter
 
getProperty(int, Object) - Method in class chemCast.data.FilteredMoleculesFile
 
getProperty(String) - Method in interface chemCast.data.IObjectFilter
 
getProperty(int, Object) - Method in class chemCast.data.MoleculesFile
 
getProperty(String) - Method in class chemCast.data.RangePropertyFilter
 
getProperty(String) - Method in class chemCast.similarity.data.Subset
 
getProperty(int) - Method in class chemCast.ui.SubsetsXYPlot
 
getPropertyChangeSupport() - Method in class chemCast.application.ChemCASTModule
 
getPropertyChangeSupport() - Method in class chemCast.similarity.data.ChemCastDescriptor
 
getPropertyChangeSupport() - Method in class chemCast.similarity.data.ChemCastObject
 
getPropertyChangeSupport() - Method in interface chemCast.similarity.data.IChemCastObject
 
getPropertyTranslator() - Method in class chemCast.data.MoleculesFile
 
getPropertyX() - Method in class chemCast.ui.MoleculesXYZDataset
 
getPropertyY() - Method in class chemCast.ui.MoleculesXYZDataset
 
getPropertyZ() - Method in class chemCast.ui.MoleculesXYZDataset
 
getQuery() - Method in class chemCast.data.PairwiseSimilarityFilter
 
getReader() - Method in class chemCast.data.MoleculesFile
 
getReaderListener() - Method in class chemCast.similarity.data.SimilaritySubsets
 
getReaders() - Method in class chemCast.ui.MoleculesXYZDataset
 
getResult() - Method in class chemCast.similarity.data.ChemCastDescriptorsList
 
getResult() - Method in class chemCast.ui.SimilarityResultViewer
 
getResultField() - Method in class chemCast.similarity.data.NearestNeighborsSimilaritySubsets
 
getResultListener() - Method in class chemCast.similarity.data.SimilaritySubsets
 
getRow() - Method in class chemCast.ui.SimilarityMatrixPanel
 
getRowCount() - Method in class chemCast.ui.ChemCastListTableModel
 
getRowCount() - Method in class chemCast.ui.PropertiesTableModel
 
getRows_data() - Method in class chemCast.similarity.data.SubsetSimilarityMatrix
 
getRowSelected(JTable, int) - Method in class chemCast.ui.SelectionListener
 
getSelectedIndex() - Method in class chemCast.data.FilteredMoleculesFile
 
getSelectedIndex() - Method in class chemCast.data.MoleculesFile
 
getSelectedIndex() - Method in class chemCast.ui.ListsPanel
 
getSelectedIndex() - Method in class chemCast.ui.RadioBoxPanel
 
getSelectedItem() - Method in class chemCast.ui.ListsPanel
 
getSelectedProcessor(int) - Method in class chemCast.application.ChemCASTModule
 
getSelectedProcessor() - Method in class chemCast.similarity.data.SimilaritySubsets
 
getSeriesCount() - Method in class chemCast.ui.MoleculesXYZDataset
 
getSeriesKey(int) - Method in class chemCast.ui.MoleculesXYZDataset
 
getSimilarityMethod() - Method in class chemCast.ui.wizard.SimilarityWizard
 
getSimilarityMethods() - Method in class chemCast.similarity.data.Endpoint
 
getSource() - Method in class chemCast.events.PropertyEnabledChangeEvent
 
getSpecification() - Method in class chemCast.similarity.data.ChemCastDescriptor
 
getStatus(boolean) - Method in class chemCast.weka.AbstractWekaModel
 
getStatus(boolean) - Method in class chemCast.weka.WekaClustering
 
getStatus(boolean) - Method in class chemCast.weka.WekaSimilarityModel
 
getSubset() - Method in class chemCast.data.RandomAccessSubsetTableModel
 
getSubset() - Method in class chemCast.data.SelectedItem
 
getSubset() - Method in class chemCast.ui.wizard.EndpointsWizard
 
getSubsetIndices() - Method in class chemCast.similarity.data.SimilarityModel
 
getSubsets() - Method in class chemCast.similarity.data.Endpoint
 
getTable() - Method in class chemCast.ui.ListPanel
 
getTable() - Method in class chemCast.ui.MoleculesTable
 
getTable() - Method in class chemCast.ui.SimilarityMatrixPanel
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class chemCast.ui.PropertiesCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class chemCast.ui.PropertiesCellRenderer
 
getTag() - Method in interface chemCast.data.IPropertyFilter
 
getTag() - Method in class chemCast.data.MultiplePropertyFilters
 
getTag() - Method in class chemCast.data.ObjectPropertyFilter
 
getTag() - Method in class chemCast.similarity.data.ChemCastDescriptor
 
getTestData() - Method in class chemCast.similarity.data.Endpoint
 
getThreshold() - Method in class chemCast.data.PairwiseSimilarityFilter
 
getThreshold() - Method in class chemCast.ui.MatrixToolbar
 
getTooltip(int, int) - Method in class chemCast.ui.MoleculesXYZDataset
e.g.
getTooltipProperty() - Method in class chemCast.ui.MoleculesXYZDataset
 
getTrainingData() - Method in class chemCast.similarity.data.Endpoint
 
getType() - Method in class chemCast.similarity.data.SimilarityDef
 
getType() - Method in class chemCast.similarity.data.Subsets
 
getValue() - Method in class chemCast.data.ObjectPropertyFilter
 
getValueAt(int, int) - Method in class chemCast.ui.ChemCastListTableModel
 
getValueAt(int, int) - Method in class chemCast.ui.PropertiesTableModel
 
getValuesByField(Object) - Method in interface chemCast.ui.IKeyValuesUpdater
 
getValuesByField(Object) - Method in class chemCast.ui.wizard.SubsetWizard
Fills in values combobox based on key value.
getValuesPerField(Object, int) - Method in class chemCast.data.FilteredMoleculesFile
 
getValuesPerField(Object, int) - Method in class chemCast.data.MoleculesFile
 
getWeight() - Method in class chemCast.similarity.data.ChemCastDescriptor
 
getX(int, int) - Method in class chemCast.ui.MoleculesXYZDataset
 
getXMLElement(Document) - Method in class chemCast.similarity.data.ChemCastDescriptor
 
getXMLElement(Document) - Method in class chemCast.similarity.data.ChemCastDescriptorsList
 
getXMLElement(Document) - Method in class chemCast.similarity.data.ChemCastObject
 
getXMLElement(Collection<? extends IChemCastObject>, Document, String) - Static method in class chemCast.similarity.data.ChemCastObjectFactory
 
getXMLElement(Document) - Method in class chemCast.similarity.data.DatasetDef
 
getXMLElement(Document, Hashtable, String, String) - Method in class chemCast.similarity.data.DatasetDef
 
getXMLElement(Document) - Method in class chemCast.similarity.data.Endpoint
 
getXMLElement(Document) - Method in class chemCast.similarity.data.Endpoints
 
getXMLElement(Document) - Method in interface chemCast.similarity.data.IChemCastObject
 
getXMLElement(Document) - Method in class chemCast.similarity.data.SimilarityDef
 
getXMLElement(Document) - Method in class chemCast.similarity.data.SimilarityDefs
 
getXMLElement(Document) - Method in class chemCast.similarity.data.Subset
 
getXMLElement(Document) - Method in class chemCast.similarity.data.Subsets
 
getY(int, int) - Method in class chemCast.ui.MoleculesXYZDataset
 
getZ(int, int) - Method in class chemCast.ui.MoleculesXYZDataset
 

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